Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THYM | rs17136535 | chr7:29689158 | C/T | 5.22E-13 | 118 | 38.33 | 46.07 | 6 | KM Plot |
THYM | rs17147338 | chr4:70325886 | C/T | 1.54E-12 | 114 | 42.73 | 34.93 | 6 | KM Plot |
THYM | rs17150665 | chr7:29688860 | T/G | 5.22E-13 | 118 | 38.33 | 46.07 | 6 | KM Plot |
THYM | rs17150667 | chr7:29689338 | G/T | 5.22E-13 | 118 | 38.33 | 46.07 | 6 | KM Plot |
THYM | rs17151970 | chr10:12646813 | A/G | 0.000138 | 119 | 42.73 | 32.7 | 28.43 | KM Plot |
THYM | rs1718107 | chr12:121618762 | A/G | 2.86E-5 | 117 | 46.6 | 46.07 | 24.87 | KM Plot |
THYM | rs1718108 | chr12:121618665 | G/A | 2.86E-5 | 117 | 46.6 | 46.07 | 24.87 | KM Plot |
THYM | rs1718119 | chr12:121615103 | G/A | 2.06E-5 | 117 | 48 | 46.27 | 24.87 | KM Plot |
THYM | rs1718130 | chr12:121605954 | G/A | 1.87E-5 | 118 | 46.6 | 46.27 | 24.87 | KM Plot |
THYM | rs1718131 | chr12:121606319 | G/A | 1.87E-5 | 118 | 46.6 | 46.27 | 24.87 | KM Plot |
THYM | rs1718132 | chr12:121606350 | G/T | 1.87E-5 | 118 | 46.6 | 46.27 | 24.87 | KM Plot |
THYM | rs1718133 | chr12:121607861 | C/T | 1.87E-5 | 119 | 46.6 | 46.27 | 23.9 | KM Plot |
THYM | rs1718135 | chr12:121607987 | G/A | 1.87E-5 | 118 | 46.6 | 46.27 | 24.87 | KM Plot |
THYM | rs1718136 | chr12:121609608 | A/G | 1.87E-5 | 118 | 46.6 | 46.27 | 24.87 | KM Plot |
THYM | rs1718137 | chr12:121609813 | C/T | 1.87E-5 | 118 | 46.6 | 46.27 | 24.87 | KM Plot |